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2008 Proteomics Seminar Tour

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Agendas and Dates:
Mon Oct 6Tours
Tue Oct 7Utrecht
Wed Oct 8Copenhagen
Thu Oct 9Stockholm
Wed Oct 15Manchester
Thu Oct 16Dublin
Fri Oct 17London
Mon Oct 20 Vienna
Tue Oct 21Munich
Wed Oct 22 Basel
Thu Oct 23 Berlin
Mon Nov 10Madrid
Wed Nov 12 Barcelona
Thu Nov 13Milan

Abstracts
• Juan Casado-Vela
Applicability of LTQ-Orbitrap MS to address proteomic studies: high-throughput protein ID, changes of protein level using iTRAQ and de novo sequencing.

• Bruno Domon
Novel Strategies Enabling High-Throughput Proteomic Analyses

• Warwick Dunn
The role of the LTQ-Orbitrap in metabolic profiling of mammalian metabolomes

• Melanie Flint
Molecular determination of stress hormone-mediated drug resistance to Paclitaxel in breast cancer

• David Good
Characterizing the Human Embryonic Stem Cell Proteome ? Life with an ETD-Enabled Orbitrap

• Claus Jorgensen
Mapping of signaling networks in boundary formation by quantitative mass spectrometry and RNAi

• Patrick Kiefer
Metabolome analysis by liquid chromatography high resolution mass spectrometry using the LTQ-Orbitrap

• Bernhard Kuester
Robust iTRAQ peptide quantification on an LTQ-Orbitrap mass spectrometer and its application to chemical proteomics

• Martin Larsen
Phosphoproteomics ? technologies and application to the study of depolarization-dependent protein phosphorylation in nerve terminals

• Matthias Mann
Towards complete proteome quantitation

• Nick Morris
The use of phosphoproteomics to discover novel AMPK substrates

• Scott Peterman
Expediting targeted protein quantitation method development using a triple quadrupole mass spectrometer: software and hardware tools to address hypothesis-based and bioinformatics-based approaches.

• Douglas Phanstiel
Characterizing the Human Embryonic Stem Cell Proteome ? Life with an ETD-Enabled Orbitrap

• Maria Prieto (Spanish)
Análisis de Imagen por Espectrometría de Masas con el MALDI LTQ XL y MALDI LTQ Orbitrap: importancia de MS3 y del rango dinámico

• Sarah Robinson
Expediting targeted protein quantitation method development using a triple quadrupole mass spectrometer: software and hardware tools to address hypothesis-based and bioinformatics-based approaches

• John Rogers
Selective Enrichment and Quantitation of Phosphoproteins and Phosphopeptides Involved in Cell Proliferation

• Vladimir Shulaev
Metabolomics technology and bioinformatics.

• Carsten Sonksen
Full sequence and PTM characterization of recombinant proteins with analytic LC-Orbitrap MS/MS, software tools and what we still need.

• Kerstin Strupat
MALDI Produced Ions Inspected with a Linear Ion Trap - Orbitrap Mass Analyzer

• Peter Verhaert
Mass Spectrometry Imaging of Neuropeptides

• Rob Vreeken
Metabolomics and metabolite profiles for phenotyping of individuals.

• Wolfram Weckwerth
Genome-wide metabolomics, proteomics and data integration: from molecule to organism

• Amy Zumwalt
Early markers of kidney transplant rejection:
Proteomic workflows for discovery and the development of non-invasive, targeted quantitation assays

Proteomics 2008 - Vladimir Shulaev

Metabolomics technology and bioinformatics.

Vladimir Shulaev 1

1Va Bioinformatics Inst., Blacksburg, VA

Metabolomics is the global analysis of all or a large number of cellular metabolites. Like other functional genomics research, metabolomics generates large amounts of data. Handling, processing and analysis of this data is a clear challenge and requires specialized mathematical, statistical and bioinformatics tools. Metabolomics needs for bioinformatics span through data and information management, raw analytical data processing, metabolomics standards and ontology, statistical analysis and data mining, data integration, and mathematical modeling of metabolic networks within a framework of systems biology. The major approaches in metabolomics, along with the modern analytical tools used for data generation and analysis will be discussed.