Life Sciences Mass Spectrometry eNewsletter
Critical Mass Issue 13
July 2005
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 Tip of the Month: Using the Chrom Filter  
To improve the quality and reproducibility of chromatographic peaks, set the Chrom Filter value in the Instrument Setup method to the width of the LC peak, in seconds, at 25% relative abundance.
 

 Quantum Waves: Zero Cross-Talk  
In assays involving closely eluting multi-target analytes, Selective Reaction Monitoring (SRM) is the most commonly used mass spectrometry technique for performing quantitative assays on triple quadrupole systems. Examples include DMPK assays, monitoring for drugs of abuse in urine extracts, and pesticide residues monitoring in environmental samples. The SRM experiment consists of three distinct events. First, precursor ions of a specific mass to charge (m/z) ratio are transmitted through the first quadrupole, while all ions of different m/z values are filtered out. Secondly, the selected ions...
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 LTQ Orbitrap Webinar Recording  
Speaker: Helmut Muenster, Ph.D.
Agenda: The webinar introduces the LTQ Orbitrap followed by an explanation of the geometry of the hybrid instrument. This is followed by a discussion of specifications and performance highlights. The webinar concludes with some examples for drug-discovery and bottom-up proteomics.
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 Proteomics Resource Library  
The Proteomics Resource Library contains poster presentations from ABRF 2005, technical presentations, application notes and references for Finnigan LTQ, Finnigan ProteomeX LTQ, Finnigan LTQ FT and Finnigan vMALDI.
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 Thermo at HUPO 2005  
Thermo's Proteomics workshop at HUPO 2005 will cover solutions for high-throughput protein identification, PTM characterization, top-down analysis, and biomarker discovery. A high-level summary will be followed by detailed presentations describing the use of Thermo mass spectrometers by two important contributors to the Human Proteome Project, namely, Professors Chris Turck and Matthias Mann, both from the Max Planck Institute.
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 Thermo's ASMS 2005 CD  
The 2005 ASMS CD contains posters and presentations from Thermo covering top-down proteomics, biomarker discovery, small molecule quantitation, bioanalysis, metabolomics, etc.

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 Clinical Proteomics Workshop  
The Clinical Proteomics Workshop at Vanderbilt University will be held from September 26 - 30 2005. This four day workshop is for basic and clinical scientists interested in applying proteomics methods to translational and clinical research. Topics covered include analytical technologies, informatics tools and proteomics approaches to biomarker discovery and quantitation.
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 Accurate Mass Determination using FTICR  
Accurate mass measurement has been widely accepted as a method for confirmation of identity of substances and for identification of the elemental composition of unknown compounds. For the identification of unknowns it is important to get the best mass accuracy available, because the number of possible elemental composition increases dramatically with increased uncertainty in the mass accuracy. Most commercially available mass spectrometers achieve best mass accuracy (<5 ppm) only with internal calibration. Due to complications like ionization suppression users tend...
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 Software: Xcalibur 2.0 and XReport 1.0  
Version 2.0 of Xcalibur continues the tradition of a very versatile, easy-to-use data system - now enabling 21 CFR part 11 compliance. Whether you are an experienced Xcalibur user or new to our software, Xcalibur's homepage offers easy navigation through the process of instrument setup, sequence setup, and data acquisition. The review of results is easy in one of three browser environments; Qual Browser, Quan Browser, Library Browser. Reporting is now easier with the all-new XReport.
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 Trap Talk: Scan Speed vs. Cycle Time  
One of the key advantages of ion trap mass spectrometry is the ability to perform multiple MS/MS (or MS) fragmentation steps on a single precursor ion and its product ions to create a cascade of product-precursor ion relationships that yield extensive amounts of structural information. To achieve maximum benefit in an LC/MS experiment, the series of events starting from the process of filling the ion trap through detecting the ions must be optimized for a chromatographic timescale.
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