Life Sciences Mass Spectrometry eNewsletter
Critical Mass Issue 33
July 2007
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 New Products Introduced at ASMS 2007  
Thermo Fisher Scientific introduced several new products at ASMS 2007 including:
. LTQ Orbitrap XL™ - Unrivaled Performance and Flexibility
. LTQ Orbitrap Discovery™ - Breakthrough Technology for Every Lab
. ETD on the LTQ XL - Improving Protein Characterization with Ion/Ion Chemistry
. LCQ Fleet LC/MSⁿ - Exceptional Analytical Value
. FAIMS on Ion Traps - Multiple Degrees of Separation
. TSQ Quantum GC - The Next Evolution in GC Triple Quadrupoles
. Quick Calc - Powering HT-ADME Research
Learn More About These Products 

 Tip of the Month: NSI Infusion  
When tuning for NSI optimization, infusion via syringe at 1uL/min can be erratic or can occasionally leak at the syringe sleeve fitting. Filling a 100uL loop with the tuning peptide (utilising the syringe and sleeve to fill) and then fitting this using adaptors between the pump line and the silica tubing leading to the NSI needle, can help address this issue. The pump needs to be set at 1uL/min (100uL/min, split 1:100). The subsequent flow is very stable and tuning optimization is more realistic.

--- Contributed by Critical Mass Subscriber Nigel Joyce, Crop and Food Research, New Zealand
 

 Software Update  
Here are the software updates for July 2007. Note that SIEVE 1.1.0 FREE upgrade is available only until September 30 2007. Please contact your local sales representative regarding questions on how to upgrade your software.
Note: This list is subject to change without notice as our software is continuously being updated.
View Updates Now 

 Webinar: Proteomics Analysis - LTQ Orbitrap XL™ vs. QSTAR Elite® By Vlad Zabrouskov, Ph.D.  
This webinar discusses the results of a head-to-head comparison between the QSTAR Elite (with ProteinPilot™) and the LTQ Orbitrap XL (with Mascot™) in identifying and structurally characterizing peptides in a highly complex sample mixture.
Register to View Webinar 

 Webinar: MetWorks Software for the Confident Analysis of Metabolism Data By Amber Kohl, Ph.D.  
This webinar highlights the details of this powerful data mining tool for small molecules. This MetWorks webinar consists of six different sections, including:
• an introduction to the software
• a discussion of the user-friendly MetWorks workflow
• how to process a sample from a Data Dependent™ experiment
• how to acquire and process a sequence of samples
• how to process a sample from a Quantum precursor ion or constant neutral loss experiment, and
• coverage of the accurate mass features that are incorporated in MetWorks.
MetWorks continues to be a commanding means for profiling metabolic data. Learn how this tool can ensure confident analysis of metabolism data by viewing this 108 minute webinar.
Register to View Webinar 

 Webinar: Introduction to the QED Scan Function for Triple Quadrupole Mass Spectrometry By Jonathan Beck, Ph.D.  
This webinar discusses the features and benefits of using the Quantitative Enhanced Data Dependent Scan function (QED) in triple quadrupole experiments. QED enables the collection of both qualitative full scan Q3 data and quantitative SRM data in the same experiment. The webinar then elucidates how QED can be applied to any workflow, from proteomics to drug metabolites to environmental contaminants.
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 Webinar: QuickQuan™ 2.0 – High-Throughput Screening (HTS) Software and Hardware for Drug Discovery By Nick Duczak  
This webinar discusses QuickQuan as a HTS solution in Drug Discovery. QuickQuan alleviates the bottleneck of sample analysis in early drug discovery. It is designed for mid- to high-throughput quantification laboratories who operate in an unregulated, non-GLP environment. QuickQuan 2.0 provides users with a friendly and functional graphical user interface, as well as a comprehensive Getting Started guide to assist new users in learning the software. Attend this 28 minute webinar to learn more.
Register to View Webinar 

 Food Analysis: Multi-residue Analysis of Pesticides in Food using GC/MS/MS  
Food safety concerns are on the rise amongst consumers worldwide. In 2006, sweeping changes were made to the Food Hygiene Law in Japan regarding residues of agricultural chemicals, including pesticides, in foods. As a result, standard residue values were established for approximately 800 pesticides. All food items produced in or imported into Japan are required to meet the standards established by this law. If pesticide residues in any food items exceed these standards, then the distribution and sale of the food is prohibited. This Positive List System has had a significant effect not only on the Japanese domestic production, but also on much of the food exported to Japan from various foreign countries such as China, the United States, and Taiwan.
Download Full Article [PDF 1196 kB] 

 Congratulations to our ASMS 2007 SMI Contest Winners!  
And the winners are...
. Celeste Ptak, Cornell University
. Justin Brumbaugh, University of Wisconsin
. Dan Knapp, Medical University of South Carolina
The winners collected clues, analyzed data, correctly identified the cause of death in the race car driver mystery staged in Thermo Fisher Scientific's hospitality suite, and were drawn from a pool of correct entries. Thanks to all participants for being part of the field investigation team to help solve the mystery.
Did you get the correct answer? Find Out Now 

 Proteomics: Targeted Quantitative Protein Analysis in Human Serum using Hi-Res. MSRM  
A common endpoint for a biomarker discovery experiment is a list of putative marker proteins. A reasonable next step is to then perform targeted quantitative measurements of these proteins in an expanded patient population to assess their validity as markers. Analytical accuracy and precision are required for unambiguous quantitative analysis of targeted proteins from very complex mixtures. Wide dynamic range and high sensitivity are critical for...
Download Full Article [PDF 819 kB] 

 Trap Talk: High-Precision Elemental Composition Determination of Small Molecules using the LTQ FT Ultra Hybrid Mass Spec.  
Fourier-transform ion cyclotron resonance mass spectrometry (FTICR-MS) plays an important role for determining exact mass measurements at ultra-high resolution in academic and industrial service and research labs. Achieving exact mass measurements at very high accuracy in the parts per billion (ppb) level on precursor as well as on product ions enables high confidence level determination of the elemental composition as well as unambiguous assignment of fragment ions.
Download Full Article [PDF 1189 kB] 

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