Life Sciences Mass Spectrometry eNewsletter
Critical Mass Issue 34
September 2007
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 On-Demand Webinar: Mass Frontier™ 5.0 Software – Accelerating the Science of Spectral Interpretation By Alisha Roberts, Ph.D.  
Mass Frontier 5.0 is a powerful software package for the management, evaluation and interpretation of mass spectra. This software provides a number of useful tools for processing and organizing mass spectral and chromatographic data. Additionally, Mass Frontier provides rational understanding of compound structures and mechanistic understanding of fragmentation schemes. This is a multi-part webinar discussing the various aspects of this software.
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 Proteomics: Protein ID in Complex Digests - A Comparative Study  
Comprehensive, accurate identification of proteins in complex sample mixtures is an important fundamental capability for any proteomics research laboratory. Technology advancements in both hardware and software continue to expand and refine our view of any proteomic system in terms of protein identities and their post-translational modifications (PTMs). It has been suggested that the very recent ability to routinely obtain accurate mass measurements (<5 ppm RMS) on precursor and MS/MS fragment ions in proteomic experiments should lead to unprecedented accuracy in the ability to identify and characterize proteins.
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 Proteomics Seminar Series: Europe  
Thermo Fisher will present a set of FREE educational one-day seminars that will highlight new developments in mass spectrometry and sample preparation techniques applied to proteomics research. The keynote speakers will provide insight into progress on biomarker discovery within the cardiovascular research community (Prof. Peipei Ping, UCLA), discuss specific phosphorylation events and related pathway analyses (Prof. Roman Zubarev, University Uppsala), introduce advanced ETD techniques for characterization of intact proteins (Dr. James Stephenson, RTI North Carolina), and describe powerful approaches to studying organisms with unsequenced genomes (Dr. Andrej Shevchenko, MPI Dresden). In addition, the series will also feature several of Thermo Fisher's research scientists and application specialists.
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 Environmental Application: Analysis of Regulated Pesticides in Drinking Water  
Pesticides are used throughout the world to control pests that are harmful to crops, animals, or people. Because of the danger of pesticides to human health and the environment, regulatory agencies control their use and set pesticide residue tolerance levels. The limits of detection (LODs) for many of these substances are at the parts per trillion (ppt) level. In order to achieve this level of detection, offline sample pre-concentration is often performed. However...
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 Abstracts Database CD  
The latest release of this database, now with twenty-seven hundred mass spec abstracts is a wealth of information covering the spectrum of latest in mass spectrometry technology and applications. Addressing the needs of everyone from large molecule analysis to small molecule analysis, this CD is a handy lab tool to possess.
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 Natural Products Analysis: Profiling and Characterization of Polyphenol Polymers from Cinnamon  
Type 2 diabetes is the most common metabolic disease worldwide. Although the prevention and control of it remains unclear, there is strong evidence that dietary factors play a role in the onset of this disease. Previous studies have indicated that cinnamon may mimic insulin effects and thus may improve glucose uptake. Considering the complex composition of cinnamon, it is important to be able to isolate and characterize the possible active components in it.
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 Software Update  
Here are the software updates for September 2007. Note version upgrade for LC Devices software. Please contact your local sales representative regarding questions on how to upgrade your software.
Note: This list is subject to change without notice.
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 Chromatography: Method Transfer from HPLC to U-HPLC  
The use of sub-2 µm particles is becoming increasingly popular for applications in either High Throughput Screening (HTS) assays or in Ultra High Pressure Liquid Chromatography (U-HPLC). Sub-2 µm particle packed columns offer advantages over the more traditional columns packed with 3 and 5 µm particles through shorter analysis times, improvements in resolving power, sensitivity and peak capacity. When transferring methods from HPLC to U-HPLC, several approaches can be taken, depending on the analytical needs.
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 Trap Talk: Use of FAIMS to Separate Loperamide from PEG Prior to Ion Trap Analysis  
It is common practice in pharmaceutical development to conduct discovery phase pharmacokinetic (PK) studies. In these studies, dosing vehicles such as Tween 80, PEG 400, and methyl cellulose may be used in high concentrations to dissolve the test compounds in dose formulations. Subsequent qualitative study and quantification of the test compounds must be carried out in the presence of the dosing vehicles, which can cause significant ion suppression and complicate full scan mass spectra. Conventional liquid chromatography may be used to separate the dosing vehicle, however this approach is generally less than 100% efficient, and LC/MS analyses still show the significant presence of polymers.
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