Life Sciences Mass Spectrometry eNewsletter
Critical Mass Issue 35
December 2007
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 Tip of the Month: Library of Compounds  
Did you know that there is a library of over 1000 compounds included on every TSQ Quantum system? Some of the spectra include pesticides and antibiotic compounds, all generated on the TSQ Quantum series of instruments. To find out more, ask your sales representative for details.
 

 Webinar: Understanding Ion Suppression by Rohan A. Thakur, Ph.D.  
This webinar reviews some of the reasons behind electrospray-based ion suppression and ways to avoid it. The electrospray technique is reviewed, and conclusions from three key peer reviewed publications that correlate the impact of residual matrix components to ion suppression are highlighted. According to the literature, increased sample preparation techniques and better chromatography can decrease matrix effects. With this in mind, TurboFlow technology and its impact on ion suppression is studied using several examples. TurboFlow methods offer a unique way to reduce ion suppression, employing size exclusion, column chemistry, and gradient techniques that avoid phospholipid co-elution. The webinar concludes with tips on how to avoid ion suppression in LC-MS/MS.
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 Proteomics: Efficient Data Pre-processing of Unit Resolution ETD MS/MS Spectra  
Confident assignment of the charge state of a precursor ion from which a particular MS/MS spectrum is derived is crucial for successful and efficient spectrum analysis. High quality spectra obtained by Electron Transfer Dissociation (ETD) are usually observed from peptide precursors with charge states 3+ and higher. In the absence of precursor ion charge state information from unit resolution full MS spectra, several charge states are...
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 HUPO 2007 Posters  
Several posters were presented at HUPO's 6th Annual World Congress in 2007, covering these application areas:
- Targeted protein analysis using the TSQ Quantum Ultra™ for high-throughput peptide/protein quantitation
- Ground-breaking Electron Transfer Dissociation (ETD) technology for increased protein coverage, phosphopeptide analysis and glycopeptide characterization
- LTQ Orbitrap XL™ for definitive iTRAQ™ quantitation
- SIEVE™ automated software for biomarker discovery
- HEAVYPeptide AQUA internal standards for absolute protein quantitation
- SILAC™ reagent kits for quantitative analysis of differential protein expression
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 Webinar: The Complete Bioanalysis Solution for Regulated Environments By Patrick Jeanville, Ph.D.  
This webinar discusses LCquan software, a complete solution for quantitative bioanalysis in GLP environments. LCquan is a secure data quantitation package that supports FDA regulation 21 CFR Part 11. From within a single, user-friendly GUI, LCquan provides all the tools needed to perform quantitation tasks, including importing sequence information from external systems, acquiring data, developing processing methods, reviewing and processing data, generating reports, and exporting results to external systems.
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 Clinical Research and Toxicology Resource Kit  
Find out how LC-MS/MS technology can meet the most rigorous testing requirements and reduce costs in your lab. This informational kit highlights a wide range of advanced Thermo Scientific LC-MS/MS solutions for clinical research and toxicology, with peer-reviewed article reprints, application notes and brochures included.
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 FAIMS-based LC/MS Analytical Method is Validated by A&M Labor fuer Analytik to Ensure Human Safety in Drug Development  
Researchers in Germany’s A&M Labs have validated a method that uses innovative Thermo Scientific high-Field Asymmetric Waveform Ion Mobility Spectrometry (FAIMS) technology to remove interferences from a drug analysis. Using this method, the researchers can adhere to the guidelines of the FDA to ensure human safety in drug development. Unforeseen analyte interferences can cause validated LC-MS methods to fail, resulting in costly delays in obtaining data from clinical trials.
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 Webinar: QuickCalc Powered by GMSU™ By Jim Koers  
QuickCalc powered by GMSU is the software that removes the bottleneck of data processing for your high throughput laboratory. Much time and effort has been spent over the past decade developing tools to increase sample throughput for analytical laboratories. The bottleneck has shifted downstream to processing the massive amounts of data generated from the instruments. QuickCalc allows the user to complete the data cycle by not only generating integrated areas and reports, but to also perform the actual PK, metabolic stability and other calculations. This presentation will introduce you to the software workflow and help you to visualize how it will fit into your laboratory's data flow.
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 Software Update  
Here are the software updates for December 2007. Please contact your local sales representative regarding questions on how to upgrade your software. Note: This list is subject to change without notice as our software is continuously being updated.
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 Environmental: Analysis of Chloroacetanilide and Other Acetamide Herbicide Degradates In Drinking Water (EPA Method 535) by LC-MS/MS  
EPA method 535 outlines a technique for the analysis of the fate of chloroacetanilide herbicide compounds in drinking water, specifically ethanesulfonic acid (ESA) and oxanillic acid (OA) degradates. These compounds may be found in water supplies near agricultural production areas and are used on various crops including corn and soybeans. Therefore, regulatory agencies around the world are interested in monitoring of these compounds.
Download Full Article [PDF 192 kB] 

 Manual and Software Download  
Customers can now download various manuals and software drivers from the Thermo Fisher Scientific website. For information on specific products, please contact your sales representative.
Visit the Manual and Software Download Site 

 Trap Talk: Webinar - Tips for Successful Mass Calibration of LTQ Orbitrap™ by Michaela Scigelova, Ph.D., and Wolfgang Metelmann-Strupat, Ph.D.  
This webinar gives a step-by-step guide to the LTQ Orbitrap mass calibration procedures. Both normal and high mass range calibrations are discussed. The presentation also features a special section describing the use of a lock-mass (internal calibration).
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