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2008 Proteomics Seminar Tour

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Agendas and Dates:
Mon Oct 6Tours
Tue Oct 7Utrecht
Wed Oct 8Copenhagen
Thu Oct 9Stockholm
Wed Oct 15Manchester
Thu Oct 16Dublin
Fri Oct 17London
Mon Oct 20 Vienna
Tue Oct 21Munich
Wed Oct 22 Basel
Thu Oct 23 Berlin
Mon Nov 10Madrid
Wed Nov 12 Barcelona
Thu Nov 13Milan

Abstracts
• Juan Casado-Vela
Applicability of LTQ-Orbitrap MS to address proteomic studies: high-throughput protein ID, changes of protein level using iTRAQ and de novo sequencing.

• Bruno Domon
Novel Strategies Enabling High-Throughput Proteomic Analyses

• Warwick Dunn
The role of the LTQ-Orbitrap in metabolic profiling of mammalian metabolomes

• Melanie Flint
Molecular determination of stress hormone-mediated drug resistance to Paclitaxel in breast cancer

• David Good
Characterizing the Human Embryonic Stem Cell Proteome ? Life with an ETD-Enabled Orbitrap

• Claus Jorgensen
Mapping of signaling networks in boundary formation by quantitative mass spectrometry and RNAi

• Patrick Kiefer
Metabolome analysis by liquid chromatography high resolution mass spectrometry using the LTQ-Orbitrap

• Bernhard Kuester
Robust iTRAQ peptide quantification on an LTQ-Orbitrap mass spectrometer and its application to chemical proteomics

• Martin Larsen
Phosphoproteomics ? technologies and application to the study of depolarization-dependent protein phosphorylation in nerve terminals

• Matthias Mann
Towards complete proteome quantitation

• Nick Morris
The use of phosphoproteomics to discover novel AMPK substrates

• Scott Peterman
Expediting targeted protein quantitation method development using a triple quadrupole mass spectrometer: software and hardware tools to address hypothesis-based and bioinformatics-based approaches.

• Douglas Phanstiel
Characterizing the Human Embryonic Stem Cell Proteome ? Life with an ETD-Enabled Orbitrap

• Maria Prieto (Spanish)
Análisis de Imagen por Espectrometría de Masas con el MALDI LTQ XL y MALDI LTQ Orbitrap: importancia de MS3 y del rango dinámico

• Sarah Robinson
Expediting targeted protein quantitation method development using a triple quadrupole mass spectrometer: software and hardware tools to address hypothesis-based and bioinformatics-based approaches

• John Rogers
Selective Enrichment and Quantitation of Phosphoproteins and Phosphopeptides Involved in Cell Proliferation

• Vladimir Shulaev
Metabolomics technology and bioinformatics.

• Carsten Sonksen
Full sequence and PTM characterization of recombinant proteins with analytic LC-Orbitrap MS/MS, software tools and what we still need.

• Kerstin Strupat
MALDI Produced Ions Inspected with a Linear Ion Trap - Orbitrap Mass Analyzer

• Peter Verhaert
Mass Spectrometry Imaging of Neuropeptides

• Rob Vreeken
Metabolomics and metabolite profiles for phenotyping of individuals.

• Wolfram Weckwerth
Genome-wide metabolomics, proteomics and data integration: from molecule to organism

• Amy Zumwalt
Early markers of kidney transplant rejection:
Proteomic workflows for discovery and the development of non-invasive, targeted quantitation assays









European Proteomics Seminar Series 2008

Dear Colleagues,

The Thermo Scientific Proteomics Seminars of have become an established venue for scientific and technological discussion and the sharing of practical tips. This year, many cities across Europe will host one of these events, and we would like to invite you to join us.

Protein quantitation is the main theme of the 2008 seminar series. These seminars provide you with the opportunity to get first-hand information about protein quantitation methods such as SILAC (for example, Prof. Matthias Mann at the Munich seminar), analysis of iTRAQ-labeled proteins with the LTQ Orbitrap (for example, Prof. Bernhard Kuester at the Berlin and Munich seminars) and targeted peptide quantitation applied to biomarker verification (for example, Prof. Mike MacCoss at the Utrecht, Copenhagen and Stockholm seminars; Dr. Melanie Flint at the London, Manchester, and Dublin seminars). In addition, Thermo Scientific application scientists will cover practical issues related to sample preparation, method setup and data processing for various quantitation approaches.

Electron Transfer Dissociation (ETD), a new dissociation technique broadly applicable to proteomics, is delivering exciting results. Scientists from Prof. Josh Coon's lab, the co-inventor of ETD, (Douglas Phanstiel and David Good) will talk about the novel LTQ Orbitrap XL ETD system and its application to the study of the human embryonic stem cell proteome. The advantages of ETD in the context of post-translational modification analysis will be discussed by Prof. Martin Larsen (at the Copenhagen and Stockholm seminars), Dr. Bruno Domon (at the Basel seminar), Dr Nick Morrice (at the London seminar) and Dr. Benito Canas (at the Madrid seminar).

Metabolomics and proteomics approaches are complementary and provide better insight into the organisation and function of biological systems. Contributions from Prof. Wolfram Weckwerth(at the Vienna seminar), Prof. Vladimir Shulaev (at the Madrid, Barcelona, and Milan seminars), Dr. Rob Vreeken (at the Dublin and Manchester seminars), Dr. Warwick Dunn (at the Utrecht and Copenhagen seminars), and Dr. Partick Kiefer in metabolomics will cover this interesting research area currently gaining momentum.

Functional proteomics (Dr. Keiryn Bennett at the Vienna seminar), signaling networks (Dr. Claus Jorgensen at the London, Manchester, and Dublin seminars), phosphopeptide and other PTM analysis (Dr. Nick Morrice at the London seminar; Dr. Carsten Sonksen at the Copenhagen seminar) and top-down intact protein analyses (Dr. Marta Vilaseca at the Barcelona seminar) add to the breadth of topics covered by Thermo Scientific Proteomics Seminars 2008.

Come and join us for the day!